I show you how to do gene ontology enrichment in python using the goatools package. This is important for those who use scanpy, scvelo, and other python bioinformatics packages. Setting it up for the first time takes a little extra work, which I cover in detail!
Notebook:
https://github.com/mousepixels/sanbomics_scripts/blob/main/GO_in_python.ipynb
0:00 Intro
0:52 goatools setup
3:25 running goatools
6:55 graphing example