To get going on a new reproducible project we're going to talk about project organization and set up the directory with git, create a conda environment, and sync everything to GitHub. Our conda environment will start out with an installation of R and the tidyverse package. The goal of this project is to highlight reproducible research practices using a number of tools. The specific output from this project will be a map-based visual that shows the level of drought across the globe.
You can find my blog post for this episode at https://www.riffomonas.org/code_club/2022-09-08-project-setup.
#conda #git #github #R #Rstats
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Microbial ecology data: https://www.riffomonas.org/minimalR/
General data: https://www.riffomonas.org/generalR/
0:00 Introduction
2:44 Create repository on GitHub
4:36 Modify repository and push changes to GitHub
12:04 Create conda environment
18:10 Create directory organization